Ryan S. Austin, PhD

Image Ryan Austin
Chercheur Scientifique

Research Scientist and Adjunct Professor in Genome Biology and Bioinformatics

Énoncés de recherches/projets

1. Régulation transcriptionnelle génétique et épigénétique des gènes de stress abiotiques chez les plantes.

2. Cartographie des traits génétiques dans les cultures avec séquençage de prochaine génération.

Prix et études

Doctorat, Biologie du génome et bioinformatique, Université de Toronto, 2009

BSc.,  Honneurs Biologié, Université de Guelph, 1997

Principales publications

  1. Chen C, Li C, Wang Y, Renaud J, Tian G, Kambhampati S, Saatian B, Nguyen V, Hannoufa A, Marsolais F, Yuan ZC, Yu K, Austin RS, Liu J, Kohalmi SE, Wu K6, Huang S, Cui Y (2017). "Cytosolic acetyl-CoA promotes histone acetylation predominantly at H3K27 in Arabidopsis". Nature Plants. 3(10):814-824. doi: 10.1038/s41477-017-0023-7. Epub 2017 Sep 25.

    2017 - Consulter les détails de la publication

  2. Xiao J, Jin R, Yu X, Shen M, Wagner JD, Pai A, Song C, Zhuang M, Klasfeld S,
    He C, Santos AM, Helliwell C, Pruneda-Paz JL, Kay SA, Lin X, Cui S, Garcia MF,
    Clarenz O, Goodrich J, Zhang X, Austin RS, Bonasio R, Wagner D. Cis and trans
    determinants of epigenetic silencing by Polycomb repressive complex 2 in
    Arabidopsis. Nat Genet. 2017 Oct;49(10):1546-1552. doi: 10.1038/ng.3937. Epub
    2017 Aug 21. PubMed PMID: 28825728.

    2017 - Consulter les détails de la publication

  3. Keegan Leckie, Shawn Hoogstra, Ellen Hamilton, Ryan S. Austin. Transcriptional regulation of cell-type specific gene expression in the Arabidopsis root. Inventing The Future: Symposium on Synthetic Biology 2.0 Western University London 2017/07/28 - 2017/07/28

    2017 - Consulter les détails de la publication

  4. Dastmalchi, M., Chapman, P., Yu, J., Austin, R.S. and Dhaubhadel, S. (2017) Transcriptomic evidence for the control of soybean root isoflavonoid content by regulation of overlapping phenylpropanoid pathways. BMC Genomics, 18:70 doi 10.1186/s12864-016-3463-y

    2017 - Consulter les détails de la publication

  5. Hossain, M.S., Shrestha, A., Zhong, S., Miri, M., Austin, R.S., Sato, S., Ross, L., Huebert, T., Tromas, A., Torres-Jerez, I., Tang, Y., Udvardi, M., Murray, J.D., Szczyglowski, K. (2016). Lotus japonicus NF-YA1 plays an essential role during nodule differentiation and targets members of the SHI/STY gene family, 29(12), 950-964. http://dx.doi.org/10.1094/MPMI-10-16-0206-R

    2016 - Consulter les détails de la publication

  6. Kambhampati S, Pandurangan S, Renaud JB, Austin RS, Sumarah MW, Marsolais F (2016) Combined transcriptomic and metabolomic approaches provide new insights into C/N partitioning in roots of Arabidopsis thaliana. Poster presentation. CSPB/CSHS 2017. Vancouver, July 4-7

    2016 - Consulter les détails de la publication

  7. Austin, R. S., Hiu, S., Waese, J., Ierullo, M., Pasha, A., Wang, T. T., Fan, J., Foong, C., Breit, R., Desveaux, D., Moses, A. and Provart, N. J. (2016), New BAR tools for mining expression data and exploring Cis-elements in Arabidopsis thaliana. Plant J, 88: 490–504. doi:10.1111/tpj.13261

    2016 - Consulter les détails de la publication

  8. Dhaubhadel, S., Austin, R.S., Marsolais, F., Chen, L., Bett, K., Islam, N.S. and Mainali, H.R.M. (2016) Seed coat transcriptome analysis of two pinto bean cultivars that differ in post-harvest seed coat darkening identifies candidate slow darkening genes. 10th Canadian Pulse Research Workshop, Winnipeg, MB, Oct 25-28.

    2016 - Consulter les détails de la publication

  9. Dhaubhadel, S., Austin, R.S., Marsolais, F., Chen, L., Bett, K., Islam, N.S. and Mainali, H.R.M. (2016) Seed coat transcriptome analysis of two pinto bean cultivars that differ in post-harvest seed coat darkening identifies candidate slow darkening genes. 10th Canadian Pulse Research Workshop, Winnipeg, MB, Oct 25-28.

    2016 - Consulter les détails de la publication

  10. Kambhampati S, Pandurangan S , Renaud J, Austin R, Sumarah M, Marsolais F (2016) Combined transcriptome and metabolome analysis of asparagine treated Arabidopsis roots provide new insights into N metabolism. Oral presentation. Plant Biotech 2016. Kingston, June 19-21

    2016 - Consulter les détails de la publication

  11. Elhiti, M., Wang, H.Y., Austin, R.S., Chen, B., Brown, D.C.W., et Wang, A.M. (2016). « Generation of chemically induced mutations using in vitro propagated shoot tip tissues for genetic improvement of fruit trees. », Plant Cell, Tissue and Organ Culture: Journal of Plant Biotechnology, 124(2), p. 447-452. doi : 10.1007/s11240-015-0894-0

    2016 - Consulter les détails de la publication

  12. Bett, K.E., Stonehouse, R.G., Miklas, P.N., Dhaubhadel, S., Austin, R.S., et Marsolais, F. (2015). « Is the slow-darkening gene another allele at P? », Bean Improvement Cooperatives 2015, Niagara Falls, ON, Canada, November 1-4, 2015. (Résumé)

    2015 - Consulter les détails de la publication

  13. Kambhampati, S., Pandurangan, S., Pajak, A., Austin, R.S., et Marsolais, F. (2014). « Transcriptional responses to exogenous asparagine in Arabidopsis roots. », Eastern Regional Meeting of the Canadian Society of Plant Biologists, Guelph, ON, Canada, November 28-29, 2014. (Affiche)

    2014 - Consulter les détails de la publication

  14. Bergin, F., Leckie, K., Croft, M., et Austin, R.S. (2014). « Cell-type specific chromatin dynamics in the Arabidopsis Root. », 25th International Conference on Arabidopsis Research, Vancouver, BC, Canada, July 28-August 1, 2014, #296. (Affiche)

    2014 - Consulter les détails de la publication

  15. Austin, R.S. (2014). « Applications of NGS to crop research and development. », Canadian NGS Symposium, Toronto ON, Canada, September 25,2014. (Présentation)

    2014 - Consulter les détails de la publication

  16. Zou, X., Shi, C., Austin, R.S., Merico, D., Munholland, S., Marsolais, F., Navabi, A., Crosby, W.L., Pauls, K.P., Yu, K., et Cui, Y. (2014). « Genome-wide SNP and InDel discovery and transcriptional profiling of CBB resistance in common bean. », 6th International Food Legumes Research Conference (IFLRC VI) and 7th International Conference on Legume Genetics and Genomics (ICLGG VII), Saskatoon, SK, Canada, July 14-17, 2014, Presentation. (Affiche)

    2014 - Consulter les détails de la publication

  17. Dhaubhadel, S., Austin, R.S., Marsolais, F., Mainali, H.R., P-Behnami, S., Pajak, A., et Chen, L. (2014). « Seed coat RNAseq analysis of two Pinto bean cultivars that differ in post-harvest seed coat darkening. », Joint conference of the 6th International Food Legumes Research Conference (IFLRC VI) and 7th International Conference on Legume Genetics and Genomics (ICLGG VII), Saskatoon, SK, Canada, July 6-11, 2014.

    2014 - Consulter les détails de la publication

  18. Zou, X., Shi, C., Austin, R.S., Merico, D., Munholland, S., Marsolais, F., Navabi, A., Crosby, W.L., Pauls, K.P., Yu, K., et Cui, Y. (2014). « Genome-wide single nucleotide polymorphism and Insertion-Deletion discovery through next-generation sequencing of reduced representation libraries in common bean. », Molecular Breeding, 33(4), p. 769-778. doi : 10.1007/s11032-013-9997-7

    2014 - Consulter les détails de la publication

  19. Na, R., Yu, D., Chapman, B. P., Zhang, Y., Zhang, Y., Kuflu, K., Austin, R.S., Qutob, D., Zhao, J., Wang, Y., et Gijzen, M. (2014). « Genome Re-Sequencing and Functional Analysis Places the Phytophthora sojae Avirulence Genes Avr1c and Avr1a in a Tandem Repeat at a Single Locus. », PLoS ONE, 9(2: Article e89738). doi : 10.1371/journal.pone.0089738

    2014 - Consulter les détails de la publication

  20. Austin, R.S., Chatfield, S.P., Desveaux, D., et Guttman, D.S. (2014). « Next-generation mapping of genetic mutations using bulk population sequencing. », Methods in Molecular Biology (Clifton, N.J.), 1062, p. 301-315. doi : 10.1007/978-1-62703-580-4_17

    2014 - Consulter les détails de la publication

Installation de recherche

1391, rue Sandford
London, ON N5V 4T3
Canada

Affiliations

Professeur auxillaire, Western University

Membre - Société canadienne des biologistes des plantes

Membre - Société américaine des biologistes des plantes

Language

Anglais