Nicholas (Nick) Tinker, Ph. D.

Image Nicholas Tinker
Chercheur

Recherche en bioinformatique et en génomique pour l'amélioration de l'avoine et d'autres cultures céréalières.

Agriculture et Agroalimentaire Canada

Recherche et / ou projets en cours

  • Support bioinformatique pour la génomique des plantes
  • Génomiques et bioinformatiques pour l'amélioration de l'avoine

Principales publications

  1. Bekele, W. A., Wight, C. P., Chao, S., Howarth, C. J., and Tinker, N. A., 2018: Haplotype based genotyping-by-sequencing in oat genome research. Plant Biotechnology Journal Online-First, 10.1111/pbi.12888.

  2. Bjørnstad, Å., He, X., Tekle, S., Klos, K., Huang, Y. F., Tinker, N. A., Dong, Y., and Skinnes, H., 2017: Genetic variation and associations involving Fusarium head blight and deoxynivalenol accumulation in cultivated oat (Avena sativa L.). Plant Breeding 136, 620-636.

  3. Chaffin, A. S., Huang, Y.-F., Smith, S., Bekele, W. A., Babiker, E., Gnanesh, B. N., Foresman, B. J., Blanchard, S. G., Jay, J. J., Reid, R. W., Wight, C. P., Chao, S., Oliver, R., Islamovic, E., Kolb, F. L., McCartney, C., Mitchell Fetch, J. W., Beattie, A. D., Bjørnstad, Å., Bonman, J. M., Langdon, T., Howarth, C. J., Brouwer, C. R., Jellen, E. N., Esvelt Klos, K., Poland, J. A., Hseih, T.-F., Brown, R., Jackson, E., Schlueter, J. A., and Tinker, N. A., 2016: A consensus map in cultivated hexaploid oat reveals conserved grass synteny with substantial sub-genome rearrangement. The Plant Genome 9.

  4. Esvelt Klos, K., Yimer, B. A., Babiker, E. M., Beattie, A. D., Bonman, J. M., Carson, M. L., Chong, J., Harrison, S. A., Ibrahim, A., Kolb, F. L., McCartney, C. A., McMullen, M., Mitchell Fetch, J., Mohammadi, M., Murphy, J. P., and Tinker, N. A., 2017: Genome-wide association mapping of crown rust resistance in oat elite germplasm. The Plant Genome 10(12).

  5. Esvelt Klos, K., Huang, Y.-F., Bekele, W. A., Obert, D. E., Babiker, E., Beattie, A. D., Bjørnstad, Å., Bonman, J. M., Carson, M. L., Chao, S., Gnanesh, B. N., Griffiths, I., Harrison, S. A., Howarth, C. J., Hu, G., Ibrahim, A., Islamovic, E., Jackson, E., Jannink, J. L., Kolb, F. L., McMullen, M. S., Mitchell Fetch, J. W., Murphy, J. P., Ohm, H. W., Rines, H. W., Rossnagel, B. G., Schlueter, J. A., Sorrells, M. E., Wight, C. P., Yan, W., and Tinker, N. A., 2016: Population genomics related to adaptation in elite oat germplasm. The Plant Genome 9.

  6. Huang, Y. F., Poland, J. A., Wight, C. P., Jackson, E. W., and Tinker, N. A., 2014: Using genotyping-by-sequencing (GBS) for genomic discovery in cultivated oat. PLoS ONE 9, e102448.

  7. Oliver, R. E., Tinker, N. A., Lazo, G. R., Chao, S., Jellen, E. N., Carson, M. L., Rines, H. W., Obert, D. E., Lutz, J. D., Shackelford, I., Korol, A. B., Wight, C. P., Gardner, K. M., Hattori, J., Beattie, A. D., Bjørnstad, Å., Bonman, J. M., Jannink, J.-L., Sorrells, M. E., Brown-Guedira, G. L., Mitchell Fetch, J. W., Harrison, S. A., Howarth, C. J., Ibrahim, A., Kolb, F. L., McMullen, M. S., Murphy, J. P., Ohm, H. W., Rossnagel, B. G., Yan, W., Miclaus, K. J., Hiller, J., Maughan, P. J., Redman Hulse, R. R., Anderson, J. M., Islamovic, E., and Jackson, E. W., 2013: SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species. PLoS ONE 8, e58068.

  8. Tinker, N. A., Bekele, W. A., and Hattori, J., 2016: Haplotag: software for haplotype-based genotyping-by-sequencing analysis. G3: Genes Genomes Genetics 6, 857-863.

  9. Tinker, N. A., Chao, S., Lazo, G. R., Oliver, R. E., Huang, Y.-F., Poland, J. A., Jellen, E. N., Maughan, P. J., Kilian, A., and Jackson, E. W., 2014: A SNP genotyping array for hexaploid oat. The Plant Genome 7.

  10. Yan, H., Martin, S. L., Bekele, W. A., Latta, R. G., Diederichsen, A., Peng, Y., and Tinker, N. A., 2016: Genome size variation in the genus Avena. Genome 59, 209–220.

  11. Yan, H., Bekele, W. A., Wight, C. P., Peng, Y., Langdon, T., Latta, R. G., Fu, Y.-B., Diederichsen, A., Howarth, C. J., Jellen, E. N., Boyle, B., Wei, Y., and Tinker, N. A., 2016: High-density marker profiling confirms ancestral genomes of Avena species and identifies D-genome chromosomes of hexaploid oat. Theoretical and Applied Genetics 129, 2133–2149.