Soil bacterial communities exhibit systematic spatial variation with landform across a commercial potato field

Citation

Neupane, S., Goyer, C., Zebarth, B.J., Li, S., Whitney, S. (2019). Soil bacterial communities exhibit systematic spatial variation with landform across a commercial potato field. Geoderma, [online] 335 112-122. http://dx.doi.org/10.1016/j.geoderma.2018.08.016

Plain language summary

Large numbers of bacterial species inhabit soils of agricultural fields. The number and abundance of bacterial species (i.e. bacterial community diversity) is influenced by soil properties (e.g., organic matter, soil pH, clay content). It is widely accepted that soil properties in agricultural fields change along slopes, however it was unclear how slopes and soil properties would influence the bacterial community diversity. This study examined the influence of soil properties and slope characteristics on bacterial community diversity in a commercial potato field with rolling landscape. Eighty-three soil samples were collected over a distance of 1100 m. Soil pH (the acidity of the soil) was strongly correlated with slope (i.e. soils at the top of the slope were more acidic compared to soils at the foot of the slope). Analysis of the bacterial community diversity showed that soil pH, slope steepness and organic carbon were the major factors influencing the diversity of the bacterial community across the field. The study brought new insight into how bacterial communities develop in agricultural soils, and what factors may be important in maintaining soil essential functions which support crop productivity, such as nitrogen cycling and carbon matter decomposition. The two major factors influencing bacterial communities, soil pH and organic carbon, are ones that can be managed within agricultural fields through application of lime and application of organic amendments (manure, compost), respectively. Thus it may be possible to influence diversity of bacterial communities in agricultural fields.

Abstract

Topography drives spatial variation of soil edaphic factors at the landscape scale however, it is unclear how it influences the spatial distribution of bacterial communities in distances relevant to agro-ecosystem management. This study examined the influence of soil physico-chemical properties and topographic features on bacterial communities and diversity in a commercial potato field with a rolling landform. Eighty-three soil samples were systematically collected across a transect 1100 m long. A significant negative correlation (r = −0.73) between soil pH (range 4.3–7.0) and slope gradient (range 1.8–11.9%) was observed. Regressions and/or a canonical correspondence analysis showed that pH, slope gradient and organic carbon were the major factors influencing bacterial α-diversity based on 16S rRNA gene sequences. Semivariogram analyses revealed that the bacterial α-diversity, the relative abundance of most phyla, pH and slope gradient showed strong to medium spatial autocorrelations with a range between 20.8 and 217.8 m. These results evidenced that soil pH and slope gradient were the major factors explaining variation in the spatial structure of the bacterial community. Our results showed that the soil bacterial communities varied in a systematic and predictable pattern in an agricultural field in response to variation in soil physico-chemical properties and topographic features.

Publication date

2019-02-01