Ryan S. Austin, PhD

Image Ryan Austin
Research Scientist, Adjunct Professor

Research Scientist and Adjunct Professor in Genome Biology and Bioinformatics

Research and/or project statements

1. Genetic and epigenetic transcriptional regulation of abiotic stress genes in plants.

2. Mapping of genetic traits in crops with next-generation sequencing.

Education and awards

Ph.D in Genome Biology and Bioinformatics, University of Toronto, 2009

BSc. in Honours Biology, University of Guelph, 1997

Key publications

  1. Chen, C., Li, C., Wang, Y., Renaud, J., Tian, G., Kambhampati, S., Saatian, B., Nguyen, V., Hannoufa, A., Marsolais, F., Yuan, Z.C., Yu, K., Austin, R.S., Liu, J., Kohalmi, S.E., Wu, K., Huang, S., Cui, Y. (2017). Cytosolic acetyl-CoA promotes histone acetylation predominantly at H3K27 in Arabidopsis, 3(10), 814-824. http://dx.doi.org/10.1038/s41477-017-0023-7

    2017 - View publication details

  2. Xiao J, Jin R, Yu X, Shen M, Wagner JD, Pai A, Song C, Zhuang M, Klasfeld S,
    He C, Santos AM, Helliwell C, Pruneda-Paz JL, Kay SA, Lin X, Cui S, Garcia MF,
    Clarenz O, Goodrich J, Zhang X, Austin RS, Bonasio R, Wagner D. Cis and trans
    determinants of epigenetic silencing by Polycomb repressive complex 2 in
    Arabidopsis. Nat Genet. 2017 Oct;49(10):1546-1552. doi: 10.1038/ng.3937. Epub
    2017 Aug 21. PubMed PMID: 28825728.

    2017 - View publication details

  3. Keegan Leckie, Shawn Hoogstra, Ellen Hamilton, Ryan S. Austin. Transcriptional regulation of cell-type specific gene expression in the Arabidopsis root. Inventing The Future: Symposium on Synthetic Biology 2.0 Western University London 2017/07/28 - 2017/07/28

    2017 - View publication details

  4. Dastmalchi, M., Chapman, P., Yu, J., Austin, R.S., Dhaubhadel, S. (2017). Transcriptomic evidence for the control of soybean root isoflavonoid content by regulation of overlapping phenylpropanoid pathways, 18(1), http://dx.doi.org/10.1186/s12864-016-3463-y

    2017 - View publication details

  5. Hossain, M.S., Shrestha, A., Zhong, S., Miri, M., Austin, R.S., Sato, S., Ross, L., Huebert, T., Tromas, A., Torres-Jerez, I., Tang, Y., Udvardi, M., Murray, J.D., Szczyglowski, K. (2016). Lotus japonicus NF-YA1 plays an essential role during nodule differentiation and targets members of the SHI/STY gene family, 29(12), 950-964. http://dx.doi.org/10.1094/MPMI-10-16-0206-R

    2016 - View publication details

  6. Kambhampati S, Pandurangan S, Renaud JB, Austin RS, Sumarah MW, Marsolais F (2016) Combined transcriptomic and metabolomic approaches provide new insights into C/N partitioning in roots of Arabidopsis thaliana. Poster presentation. CSPB/CSHS 2017. Vancouver, July 4-7

    2016 - View publication details

  7. Austin, R.S., Hiu, S., Waese, J., Ierullo, M., Pasha, A., Wang, T.T., Fan, J., Foong, C., Breit, R., Desveaux, D., Moses, A., Provart, N.J. (2016). New BAR tools for mining expression data and exploring Cis-elements in Arabidopsis thaliana, 88(3), 490-504. http://dx.doi.org/10.1111/tpj.13261

    2016 - View publication details

  8. Dhaubhadel, S., Austin, R.S., Marsolais, F., Chen, L., Bett, K., Islam, N.S. and Mainali, H.R.M. (2016) Seed coat transcriptome analysis of two pinto bean cultivars that differ in post-harvest seed coat darkening identifies candidate slow darkening genes. 10th Canadian Pulse Research Workshop, Winnipeg, MB, Oct 25-28.

    2016 - View publication details

  9. Dhaubhadel, S., Austin, R.S., Marsolais, F., Chen, L., Bett, K., Islam, N.S. and Mainali, H.R.M. (2016) Seed coat transcriptome analysis of two pinto bean cultivars that differ in post-harvest seed coat darkening identifies candidate slow darkening genes. 10th Canadian Pulse Research Workshop, Winnipeg, MB, Oct 25-28.

    2016 - View publication details

  10. Kambhampati S, Pandurangan S , Renaud J, Austin R, Sumarah M, Marsolais F (2016) Combined transcriptome and metabolome analysis of asparagine treated Arabidopsis roots provide new insights into N metabolism. Oral presentation. Plant Biotech 2016. Kingston, June 19-21

    2016 - View publication details

  11. Elhiti, M., Wang, H., Austin, R.S., Chen, B., Brown, D., Wang, A. (2016). Generation of chemically induced mutations using in vitro propagated shoot tip tissues for genetic improvement of fruit trees, 124(2), 447-452. http://dx.doi.org/10.1007/s11240-015-0894-0

    2016 - View publication details

  12. Bett, K.E., Stonehouse, R.G., Miklas, P.N., Dhaubhadel, S., Austin, R.S., and Marsolais, F. (2015). "Is the slow-darkening gene another allele at P?", Bean Improvement Cooperatives 2015, Niagara Falls, ON, Canada, November 1-4, 2015. (Abstract)

    2015 - View publication details

  13. Zou, X., Shi, C., Austin, R.S., Merico, D., Munholland, S., Marsolais, F., Navabi, A., Crosby, W.L., Pauls, K.P., Yu, K., and Cui, Y. (2014). "Genome-wide SNP and InDel discovery and transcriptional profiling of CBB resistance in common bean.", 6th International Food Legumes Research Conference (IFLRC VI) and 7th International Conference on Legume Genetics and Genomics (ICLGG VII), Saskatoon, SK, Canada, July 14-17, 2014, Presentation. (Poster)

    2014 - View publication details

  14. Dhaubhadel, S., Austin, R.S., Marsolais, F., Mainali, H.R., P-Behnami, S., Pajak, A., and Chen, L. (2014). "Seed coat RNAseq analysis of two Pinto bean cultivars that differ in post-harvest seed coat darkening.", Joint conference of the 6th International Food Legumes Research Conference (IFLRC VI) and 7th International Conference on Legume Genetics and Genomics (ICLGG VII), Saskatoon, SK, Canada, July 6-11, 2014.

    2014 - View publication details

  15. Kambhampati, S., Pandurangan, S., Pajak, A., Austin, R.S., and Marsolais, F. (2014). "Transcriptional responses to exogenous asparagine in Arabidopsis roots.", Eastern Regional Meeting of the Canadian Society of Plant Biologists, Guelph, ON, Canada, November 28-29, 2014. (Poster)

    2014 - View publication details

  16. Bergin, F., Leckie, K., Croft, M., and Austin, R.S. (2014). "Cell-type specific chromatin dynamics in the Arabidopsis Root.", 25th International Conference on Arabidopsis Research, Vancouver, BC, Canada, July 28-August 1, 2014, #296. (Poster)

    2014 - View publication details

  17. Austin, R.S. (2014). "Applications of NGS to crop research and development.", Canadian NGS Symposium, Toronto ON, Canada, September 25,2014. (Presentation)

    2014 - View publication details

  18. Na, R., Yu, D., Chapman, B. P., Zhang, Y., Zhang, Y., Kuflu, K., Austin, R.S., Qutob, D., Zhao, J., Wang, Y., and Gijzen, M. (2014). "Genome Re-Sequencing and Functional Analysis Places the Phytophthora sojae Avirulence Genes Avr1c and Avr1a in a Tandem Repeat at a Single Locus.", PLoS ONE, 9(2: Article e89738). doi : 10.1371/journal.pone.0089738

    2014 - View publication details

  19. Zou, X., Shi, C., Austin, R.S., Merico, D., Munholland, S., Marsolais, F., Navabi, A., Crosby, W.L., Pauls, K.P., Yu, K., Cui, Y. (2014). Genome-wide single nucleotide polymorphism and Insertion-Deletion discovery through next-generation sequencing of reduced representation libraries in common bean, 33(4), 769-778. http://dx.doi.org/10.1007/s11032-013-9997-7

    2014 - View publication details

  20. Austin, R.S., Chatfield, S.P., Desveaux, D., and Guttman, D.S. (2014). "Next-generation mapping of genetic mutations using bulk population sequencing.", Methods in Molecular Biology (Clifton, N.J.), 1062, pp. 301-315. doi : 10.1007/978-1-62703-580-4_17

    2014 - View publication details

Research facility

1391 Sandford Street
London, ON N5V 4T3
Canada

Affiliations

Adjunct Professor, University of Western Ontario

Member - Canadian Society of Plant Biologists

Member - American Society of Plant Biologists

Language

English